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Title

Optimal Distance Matrix for Multiple Alignment of Amino acid sequences

Author

Ayako OHSHIRO, Takeo OKAZAKI

Citation

Vol. 18  No. 10  pp. 24-28

Abstract

Sequence alignment programs comprise numerous algorithms including scoring matrices, e.g., the distance matrix, and methods of elucidating relationships among different target amino acid sequences. Since amino acid sequences have various biological properties, an optimal combination of distance matrices and methods should be selected. This study aimed to identify an optimal distance matrix for each biological characteristic from a plurality of distance matrix prepared in advance for the amino acid sequences acquired from database site with comparative experiments.

Keywords

Distance Matrix, Amino acid sequence, Alignment

URL

http://paper.ijcsns.org/07_book/201810/20181005.pdf